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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21438976_21439198_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21438976 - 21439198
Intron Length:
223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
GCTTTGTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
CTTTTCCTAACA
Flanking Amino Acid:
VLNRDPDRPEECNLVEGEDH
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.7
29.5
Major BPS
72
0.55
1
71.8
31.4
Major PPT
80.3
0.68
0.9
77
37.3
Minor 5ss
34
-1.8
3.1
44.6
43.4
Minor BPS
69
0.59
1.7
79.54
36.7

Associated Gene:

Gene:
PPIP5K1
Ensembl Gene ID:
ENSAPLG00000010796
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025838
21435347 - 21480410
45064
ENSAPLT00000037151
21434121 - 21480410
46290
ENSAPLT00000023289
21435347 - 21480410
45064
ENSAPLT00000034618
21435347 - 21480410
45064
ENSAPLT00000011289
21435347 - 21480410
45064
ENSAPLT00000033765
21434121 - 21480410
46290
ENSAPLT00000046931
21434121 - 21480410
46290
ENSAPLT00000030246
21435347 - 21480410
45064
ENSAPLT00000041625
21435347 - 21480410
45064