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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21439354_21440347_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21439354 - 21440347
Intron Length:
994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
ACTTCCCTGATG
Flanking Amino Acid:
GGGSQRLFRKIGSRSSVYSP
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
71.2
34.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
87.1
0.83
0.8
84.6
30.3
Minor 5ss
24.3
-3
3.1
29.7
43.1
Minor BPS
55.9
0.04
1.8
61.39
40.9

Associated Gene:

Gene:
PPIP5K1
Ensembl Gene ID:
ENSAPLG00000010796
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030246
21435347 - 21480410
45064
ENSAPLT00000041625
21435347 - 21480410
45064
ENSAPLT00000025838
21435347 - 21480410
45064
ENSAPLT00000037151
21434121 - 21480410
46290
ENSAPLT00000011289
21435347 - 21480410
45064
ENSAPLT00000034618
21435347 - 21480410
45064
ENSAPLT00000033765
21434121 - 21480410
46290
ENSAPLT00000046931
21434121 - 21480410
46290