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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21440450_21440723_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21440450 - 21440723
Intron Length:
274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGAA
5'SS Class:
major
3'SS Sequence:
TTTCTCTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATCTAT
U12 Branch Point Sequence:
GTGTATCTATTT
Flanking Amino Acid:
FMPTDGTDVKVYTVGPDYAH
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.2
34.2
Major BPS
66
0.4
1.3
64.8
42.4
Major PPT
83.2
0.75
0.7
77.2
31.5
Minor 5ss
28.6
-2.5
3.5
37.7
47.1
Minor BPS
44.2
-0.3
2
62.11
42.2

Associated Gene:

Gene:
PPIP5K1
Ensembl Gene ID:
ENSAPLG00000010796
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025838
21435347 - 21480410
45064
ENSAPLT00000037151
21434121 - 21480410
46290
ENSAPLT00000011289
21435347 - 21480410
45064
ENSAPLT00000034618
21435347 - 21480410
45064
ENSAPLT00000033765
21434121 - 21480410
46290
ENSAPLT00000046931
21434121 - 21480410
46290
ENSAPLT00000030246
21435347 - 21480410
45064
ENSAPLT00000041625
21435347 - 21480410
45064