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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21447123_21447851_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21447123 - 21447851
Intron Length:
729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTCTTCCT
5'SS Class:
major
3'SS Sequence:
TCTGTTGTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCACAT
U12 Branch Point Sequence:
CATAGCTGAAAT
Flanking Amino Acid:
VQMTAAAFAKGLLALEGELT
Intron Amino Acid Position:
592

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63
0.31
1.3
60.5
43.9
Major BPS
62.5
0.31
1.2
69
38.9
Major PPT
70.5
0.46
1
70.3
40.1
Minor 5ss
32.2
-2
3
44
42.9
Minor BPS
46.8
-0.1
2
64.4
45.1

Associated Gene:

Gene:
PPIP5K1
Ensembl Gene ID:
ENSAPLG00000010796
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025838
21435347 - 21480410
45064
ENSAPLT00000037151
21434121 - 21480410
46290
ENSAPLT00000023289
21435347 - 21480410
45064
ENSAPLT00000034618
21435347 - 21480410
45064
ENSAPLT00000011289
21435347 - 21480410
45064
ENSAPLT00000033765
21434121 - 21480410
46290
ENSAPLT00000046931
21434121 - 21480410
46290
ENSAPLT00000030246
21435347 - 21480410
45064
ENSAPLT00000041625
21435347 - 21480410
45064