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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21454648_21455947_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21454648 - 21455947
Intron Length:
1300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGAT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTGTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTCCCTATCA
Flanking Amino Acid:
VIMLYEDNNKDPSSEERFHV
Intron Amino Acid Position:
892

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
78.2
31.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.7
0.6
0.8
70.7
33.5
Minor 5ss
25.4
-2.8
3.5
36.8
47.7
Minor BPS
62.3
0.38
1.9
77.74
38.6

Associated Gene:

Gene:
PPIP5K1
Ensembl Gene ID:
ENSAPLG00000010796
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033765
21434121 - 21480410
46290
ENSAPLT00000046931
21434121 - 21480410
46290
ENSAPLT00000030246
21435347 - 21480410
45064
ENSAPLT00000041625
21435347 - 21480410
45064
ENSAPLT00000023289
21435347 - 21480410
45064
ENSAPLT00000037151
21434121 - 21480410
46290
ENSAPLT00000011289
21435347 - 21480410
45064
ENSAPLT00000034618
21435347 - 21480410
45064