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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21457731_21477842_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21457731 - 21477842
Intron Length:
20112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACTGTAC
5'SS Class:
major
3'SS Sequence:
GGTTTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GTTTGCTCAATT
Flanking Amino Acid:
QSSEMKQSGLGFEGCSMVPT
Intron Amino Acid Position:
1016

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
63
38.1
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
82.4
0.73
0.9
73.4
41.9
Minor 5ss
36
-1.6
3.4
49.9
46.7
Minor BPS
60.8
0.42
2
81.06
40.8

Associated Gene:

Gene:
PPIP5K1
Ensembl Gene ID:
ENSAPLG00000010796
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034618
21435347 - 21480410
45064