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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21468036_21477842_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21468036 - 21477842
Intron Length:
9807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTTTG
5'SS Class:
major
3'SS Sequence:
GGTTTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GTTTGCTCAATT
Flanking Amino Acid:
SVSFAKHPTNGFEGCSMVPT
Intron Amino Acid Position:
1078

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
71.6
40.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
82.4
0.73
0.9
73.4
41.9
Minor 5ss
42.9
-0.8
3
54.6
44.9
Minor BPS
60.8
0.42
2
81.06
40.8

Associated Gene:

Gene:
PPIP5K1
Ensembl Gene ID:
ENSAPLG00000010796
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023289
21435347 - 21480410
45064
ENSAPLT00000011289
21435347 - 21480410
45064