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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21470824_21477842_F

Intron Information:

Intron Rank:
26
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
21470824 - 21477842
Intron Length:
7019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACTGCAC
5'SS Class:
weak_major
3'SS Sequence:
GGTTTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GTTTGCTCAATT
Flanking Amino Acid:
SGQDDLECLYGFEGCSMVPT
Intron Amino Acid Position:
1081

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.1
0.21
1.2
48.2
42.2
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
82.4
0.73
0.9
73.4
41.9
Minor 5ss
30.5
-2.2
3.5
41.9
45
Minor BPS
60.8
0.42
2
81.06
40.8

Associated Gene:

Gene:
PPIP5K1
Ensembl Gene ID:
ENSAPLG00000010796
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037151
21434121 - 21480410
46290
ENSAPLT00000033765
21434121 - 21480410
46290
ENSAPLT00000025838
21435347 - 21480410
45064
ENSAPLT00000046931
21434121 - 21480410
46290
ENSAPLT00000041625
21435347 - 21480410
45064