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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21477981_21479715_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21477981 - 21479715
Intron Length:
1735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGGTG
5'SS Class:
major
3'SS Sequence:
TTCCTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
ACATGTTTAAGA
Flanking Amino Acid:
CSESHVQSTADSSGPSSTVS
Intron Amino Acid Position:
1184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.1
60.8
43.9
Major BPS
70.2
0.5
1
72.1
33
Major PPT
88.6
0.87
0.6
84
24
Minor 5ss
31.8
-2.1
3.8
46.5
48.8
Minor BPS
48.5
-0.1
2
57.77
42.2

Associated Gene:

Gene:
PPIP5K1
Ensembl Gene ID:
ENSAPLG00000010796
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037151
21434121 - 21480410
46290