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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21500541_21502393_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21500541 - 21502393
Intron Length:
1853

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCATG
5'SS Class:
strong_major
3'SS Sequence:
CCTGTCTCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
TTGACCTTTATT
Flanking Amino Acid:
KFAEILSDPEVTQILSNTDS
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.8
38.7
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
66.7
0.38
0.9
62.2
33.5
Minor 5ss
37.5
-1.4
3
47.8
47.9
Minor BPS
65.6
0.57
1.7
80.72
41.2

Associated Gene:

Gene:
MAP1A
Ensembl Gene ID:
ENSAPLG00000027744
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017784
21488109 - 21539485
51377