Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21502535_21503725_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21502535 - 21503725

Intron Length:

1191

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGACA

5'SS Class:

strong_major

3'SS Sequence:

CTCATGGCAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GATTAAT

U12 Branch Point Sequence:

ATCAGATTAATG

Flanking Amino Acid:

NPNVDSIVSEVHSLLCDSSA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.8

0.96

0.8

81.4

32.1

Major BPS

0.6

1.2

75.9

36.3

Major PPT

60.3

0.23

53.8

40.3

Minor 5ss

32.5

-2

3.1

40.7

45.3

Minor BPS

45.8

-0.4

2.1

51.47

43.1

Associated Gene:

Gene:

MAP1A

Ensembl Gene ID:

ENSAPLG00000027744

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017784

21488109 - 21539485

51377