Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2152791_2153049_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2152791 - 2153049

Intron Length:

259

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAGCT

5'SS Class:

strong_major

3'SS Sequence:

GGTATGATTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

ATTTTCTTACCC

Flanking Amino Acid:

VAPSFVRKVQAMLNNREDVP

Intron Amino Acid Position:

1688

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.6

0.98

0.8

81.6

Major BPS

84.4

0.85

1.1

34.5

Major PPT

67.4

0.39

1.1

58.8

Minor 5ss

33.1

-1.9

3.4

48.3

47.4

Minor BPS

71.8

0.66

1.5

80.19

34.7

Associated Gene:

Gene:

MYO5C

Ensembl Gene ID:

ENSAPLG00000023919

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029054

2152638 - 2187132

34495