Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2153809_2154865_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2153809 - 2154865

Intron Length:

1057

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAGCCA

5'SS Class:

major

3'SS Sequence:

TGGTTTAACACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTCAT

U12 Branch Point Sequence:

CATGGTTTAACA

Flanking Amino Acid:

MCSCRKGMQIRCNISYLEEW

Intron Amino Acid Position:

1602

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.6

0.68

65.6

Major BPS

84.8

0.86

85.7

34.9

Major PPT

67.9

0.4

62.4

42.4

Minor 5ss

30.4

-2.2

3.3

39.6

45.9

Minor BPS

53.6

0.11

1.9

63.63

43.2

Associated Gene:

Gene:

MYO5C

Ensembl Gene ID:

ENSAPLG00000023919

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029054

2152638 - 2187132

34495