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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21554868_21555157_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21554868 - 21555157
Intron Length:
290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCGCC
5'SS Class:
major
3'SS Sequence:
CTTTCTGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGGTGAG
U12 Branch Point Sequence:
AACCCCCGAGGT
Flanking Amino Acid:
EEAPPPGGESSASVKTEERV
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
62.1
38.4
Major BPS
43.4
-0.4
1.6
34.6
43.7
Major PPT
85.3
0.79
0.8
80.2
31.8
Minor 5ss
30.8
-2.2
3.5
41.3
45.5
Minor BPS
38.1
-0.8
2
51.14
42.3

Associated Gene:

Gene:
TP53BP1
Ensembl Gene ID:
ENSAPLG00000010574
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045662
21553619 - 21594768
41150
ENSAPLT00000034416
21554428 - 21594768
40341
ENSAPLT00000011020
21551374 - 21594933
43560