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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21555229_21555839_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
21555229 - 21555839
Intron Length:
611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTTCT
5'SS Class:
weak_major
3'SS Sequence:
TGTTTGATGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
CATATATTACTT
Flanking Amino Acid:
EDCPTSPCVEDTGMSQLPFG
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.1
74.1
37.2
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
67.4
0.39
1.1
67
43.8
Minor 5ss
65.7
0.53
1.9
77.2
37.8
Minor BPS
46.4
-0.1
1.9
62.32
42

Associated Gene:

Gene:
TP53BP1
Ensembl Gene ID:
ENSAPLG00000010574
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034416
21554428 - 21594768
40341
ENSAPLT00000017193
21550946 - 21593403
42458
ENSAPLT00000011020
21551374 - 21594933
43560
ENSAPLT00000045662
21553619 - 21594768
41150
ENSAPLT00000045202
21550946 - 21594933
43988