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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2155720_2156987_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2155720 - 2156987
Intron Length:
1268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
AACTTAATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TACAACTTAATT
Flanking Amino Acid:
NCLKQYSGEEEFMKSNTPRQ
Intron Amino Acid Position:
1458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
67.1
0.38
1
60.3
39.6
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
63.4
0.5
1.6
75.1
41.5

Associated Gene:

Gene:
MYO5C
Ensembl Gene ID:
ENSAPLG00000023919
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029054
2152638 - 2187132
34495