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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21562049_21563053_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21562049 - 21563053
Intron Length:
1005

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCATCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
AGTAATTTATTT
Flanking Amino Acid:
SSPTEQEQAKDEQMDISIPS
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.5
34.8
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
81.7
0.71
0.8
74.2
35.6
Minor 5ss
38.7
-1.3
3.4
56.7
47.6
Minor BPS
48
-0
1.7
64.87
39.7

Associated Gene:

Gene:
TP53BP1
Ensembl Gene ID:
ENSAPLG00000010574
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011020
21551374 - 21594933
43560
ENSAPLT00000045662
21553619 - 21594768
41150
ENSAPLT00000045202
21550946 - 21594933
43988
ENSAPLT00000034416
21554428 - 21594768
40341
ENSAPLT00000017193
21550946 - 21593403
42458