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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21577614_21578140_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21577614 - 21578140
Intron Length:
527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAA
U12 Branch Point Sequence:
TGACACTGAAAT
Flanking Amino Acid:
SEESLRFCLEKPTASDRKNG
Intron Amino Acid Position:
922

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
72.3
31
Major BPS
62
0.3
1
53
34.1
Major PPT
82
0.72
0.8
79.6
32.4
Minor 5ss
32.4
-2
3.4
41.9
39.1
Minor BPS
49
0
1.7
67.49
41.7

Associated Gene:

Gene:
TP53BP1
Ensembl Gene ID:
ENSAPLG00000010574
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034416
21554428 - 21594768
40341
ENSAPLT00000017193
21550946 - 21593403
42458
ENSAPLT00000011020
21551374 - 21594933
43560
ENSAPLT00000045662
21553619 - 21594768
41150
ENSAPLT00000045202
21550946 - 21594933
43988