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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21578187_21579462_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21578187 - 21579462
Intron Length:
1276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGGG
5'SS Class:
major
3'SS Sequence:
TCTGCGTTGCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATC
Flanking Amino Acid:
DRKNGSAAAASSQKASSVFS
Intron Amino Acid Position:
937

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1.1
67.1
44.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
64.3
0.32
1
57.7
43.2
Minor 5ss
37.6
-1.4
3.2
49.7
46.6
Minor BPS
81.7
0.97
0.9
85.33
26

Associated Gene:

Gene:
TP53BP1
Ensembl Gene ID:
ENSAPLG00000010574
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011020
21551374 - 21594933
43560
ENSAPLT00000045662
21553619 - 21594768
41150
ENSAPLT00000045202
21550946 - 21594933
43988
ENSAPLT00000034416
21554428 - 21594768
40341
ENSAPLT00000017193
21550946 - 21593403
42458