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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21583750_21584085_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21583750 - 21584085
Intron Length:
336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGCA
5'SS Class:
strong_major
3'SS Sequence:
ATGAATTCTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
GTTAACTGAACT
Flanking Amino Acid:
PIGRGTLGRLSPRKGAGQPA
Intron Amino Acid Position:
1281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
76.8
31.8
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
65.4
0.35
1
55.7
44.7
Minor 5ss
39.1
-1.2
3
50.2
46.2
Minor BPS
61.7
0.45
1.7
80.31
40.5

Associated Gene:

Gene:
TP53BP1
Ensembl Gene ID:
ENSAPLG00000010574
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011020
21551374 - 21594933
43560
ENSAPLT00000045662
21553619 - 21594768
41150
ENSAPLT00000045202
21550946 - 21594933
43988
ENSAPLT00000034416
21554428 - 21594768
40341
ENSAPLT00000017193
21550946 - 21593403
42458