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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21584263_21584476_F

Intron Information:

Intron Rank:
18
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
21584263 - 21584476
Intron Length:
214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCCTGG
5'SS Class:
weak_major
3'SS Sequence:
GTCTTTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TCTTTTCTACAG
Flanking Amino Acid:
GRPPSRTTATRDLAGIPGVE
Intron Amino Acid Position:
1340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64
0.33
1.3
51.7
47.7
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
85.3
0.79
0.8
79.9
32.3
Minor 5ss
47.7
-0.2
2.9
65.1
46.1
Minor BPS
44.2
-0.5
2
52.14
42.9

Associated Gene:

Gene:
TP53BP1
Ensembl Gene ID:
ENSAPLG00000010574
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011020
21551374 - 21594933
43560
ENSAPLT00000045662
21553619 - 21594768
41150
ENSAPLT00000045202
21550946 - 21594933
43988
ENSAPLT00000034416
21554428 - 21594768
40341
ENSAPLT00000017193
21550946 - 21593403
42458