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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2158448_2159151_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2158448 - 2159151
Intron Length:
704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATTATAG
5'SS Class:
major
3'SS Sequence:
CTCCTCTACGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATATAATT
Flanking Amino Acid:
EERIVQNLILDLKPRGVVVN
Intron Amino Acid Position:
1376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.4
0.34
1.1
55.9
37.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
73.2
0.52
0.8
68.7
30.5
Minor 5ss
43.6
-0.7
2.8
52.5
46.5
Minor BPS
64
0.52
1.7
85.84
34

Associated Gene:

Gene:
MYO5C
Ensembl Gene ID:
ENSAPLG00000023919
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029054
2152638 - 2187132
34495