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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21585219_21587806_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21585219 - 21587806
Intron Length:
2588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGGGGA
5'SS Class:
major
3'SS Sequence:
TACTATATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
GTTGTTATAATC
Flanking Amino Acid:
PLAKAADISLDNLVEGKRKR
Intron Amino Acid Position:
1545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
64.4
41.8
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
76.6
0.6
0.9
69.5
39.9
Minor 5ss
29.1
-2.4
3.5
38.1
46.8
Minor BPS
50.5
-0
1.7
63
37

Associated Gene:

Gene:
TP53BP1
Ensembl Gene ID:
ENSAPLG00000010574
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011020
21551374 - 21594933
43560
ENSAPLT00000045662
21553619 - 21594768
41150
ENSAPLT00000045202
21550946 - 21594933
43988
ENSAPLT00000034416
21554428 - 21594768
40341
ENSAPLT00000017193
21550946 - 21593403
42458