Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21588011_21588603_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21588011 - 21588603

Intron Length:

593

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGAACA

5'SS Class:

strong_major

3'SS Sequence:

CATCTTCCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GACTCAT

U12 Branch Point Sequence:

GGTCCTTCCATC

Flanking Amino Acid:

RGRKSATMKPGAVRAGEFVS

Intron Amino Acid Position:

1613

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.71

0.9

72.2

32.1

Major BPS

69.4

0.48

1.2

71.6

36.4

Major PPT

75.1

0.56

0.8

68.7

31.4

Minor 5ss

28.5

-2.5

2.7

29.8

36.4

Minor BPS

44.8

-0.4

1.9

53.56

38.2

Associated Gene:

Gene:

TP53BP1

Ensembl Gene ID:

ENSAPLG00000010574

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034416

21554428 - 21594768

40341

ENSAPLT00000017193

21550946 - 21593403

42458

ENSAPLT00000011020

21551374 - 21594933

43560

ENSAPLT00000045662

21553619 - 21594768

41150

ENSAPLT00000045202

21550946 - 21594933

43988