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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21592987_21593796_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21592987 - 21593796
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAG
U12 Branch Point Sequence:
CTTTCTTCCACA
Flanking Amino Acid:
YSLQEQKLLEWHPRENPFHN
Intron Amino Acid Position:
1782

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
76
34.9
Major BPS
64.3
0.36
1.6
74
41.2
Major PPT
84.5
0.78
0.7
79.8
25.8
Minor 5ss
34.1
-1.8
3.1
41.9
38.9
Minor BPS
54.9
0.15
2
71.01
41.7

Associated Gene:

Gene:
TP53BP1
Ensembl Gene ID:
ENSAPLG00000010574
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011020
21551374 - 21594933
43560
ENSAPLT00000045662
21553619 - 21594768
41150
ENSAPLT00000045202
21550946 - 21594933
43988
ENSAPLT00000034416
21554428 - 21594768
40341