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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21593943_21594580_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21593943 - 21594580
Intron Length:
638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTCATC
5'SS Class:
major
3'SS Sequence:
TCCTCCTGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TTTTATTTAACC
Flanking Amino Acid:
RQHYSNAHNKDIALGVYDVV
Intron Amino Acid Position:
1831

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
70.7
39.5
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
77
0.61
0.9
72.2
32.4
Minor 5ss
50.5
0.02
2.4
69.4
41.3
Minor BPS
79.6
0.91
1.3
87.36
28.9

Associated Gene:

Gene:
TP53BP1
Ensembl Gene ID:
ENSAPLG00000010574
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011020
21551374 - 21594933
43560
ENSAPLT00000045662
21553619 - 21594768
41150
ENSAPLT00000045202
21550946 - 21594933
43988
ENSAPLT00000034416
21554428 - 21594768
40341