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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21595963_21596390_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21595963 - 21596390
Intron Length:
428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATCTA
5'SS Class:
strong_major
3'SS Sequence:
CTGTAATTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGAAAT
U12 Branch Point Sequence:
CTTCCTGTAATT
Flanking Amino Acid:
GAAQLSILVKGFSRQSSLLF
Intron Amino Acid Position:
673

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
76.5
34.3
Major BPS
67.2
0.43
1.2
73.3
39.1
Major PPT
72.4
0.5
0.9
66.3
39.4
Minor 5ss
31.7
-2.1
3
40.7
45.5
Minor BPS
56.3
0.28
2
76.64
40.8

Associated Gene:

Gene:
TUBGCP4
Ensembl Gene ID:
ENSAPLG00000010724
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011226
21595511 - 21616832
21322