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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21602048_21602483_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21602048 - 21602483
Intron Length:
436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGAATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TATTTTTTGAAT
Flanking Amino Acid:
HILFTPAVLEKYNVVFKYLL
Intron Amino Acid Position:
529

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
87.3
26.9
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
75.6
0.58
0.9
71.5
38.5
Minor 5ss
40.1
-1.1
2.8
53.2
37.3
Minor BPS
66.2
0.59
1.3
80.31
35.3

Associated Gene:

Gene:
TUBGCP4
Ensembl Gene ID:
ENSAPLG00000010724
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011226
21595511 - 21616832
21322