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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21603865_21604502_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21603865 - 21604502
Intron Length:
638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTCGCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAG
U12 Branch Point Sequence:
AAGTGGTTACTT
Flanking Amino Acid:
VDWIRSTVAEHLWKLMVEES
Intron Amino Acid Position:
395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
86
30.3
Major BPS
58.6
0.21
1.5
57.1
41.8
Major PPT
71.6
0.49
1
66.4
40.7
Minor 5ss
36.8
-1.5
3.3
51.2
45.7
Minor BPS
41.6
-0.5
2.5
58.73
45

Associated Gene:

Gene:
TUBGCP4
Ensembl Gene ID:
ENSAPLG00000010724
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011226
21595511 - 21616832
21322