About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21604628_21605432_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21604628 - 21605432
Intron Length:
805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTACTTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTTTTCTTACTT
Flanking Amino Acid:
ENQNVNLTRKGSILKNQEDT
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.8
80.3
26.9
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
72.9
0.52
0.9
67.8
37.6
Minor 5ss
28.3
-2.5
2.8
33.7
41.9
Minor BPS
75.4
0.88
1.5
91.07
32.9

Associated Gene:

Gene:
TUBGCP4
Ensembl Gene ID:
ENSAPLG00000010724
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011226
21595511 - 21616832
21322