About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21609796_21610256_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21609796 - 21610256
Intron Length:
461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
ACTAATTCAACA
Flanking Amino Acid:
ISHVNYSLDQFQLLFPSVMV
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
79.7
35.4
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
82.1
0.72
0.8
76.4
32.3
Minor 5ss
42
-0.9
2.9
58.1
46.5
Minor BPS
48.8
-0
1.7
59.84
39.8

Associated Gene:

Gene:
TUBGCP4
Ensembl Gene ID:
ENSAPLG00000010724
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011226
21595511 - 21616832
21322