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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21610950_21611427_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21610950 - 21611427
Intron Length:
478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGCCG
5'SS Class:
major
3'SS Sequence:
TGTTTGCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TAGATTTTATTG
Flanking Amino Acid:
EQYTGHVQQQDHHVSQQNQG
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
54
44.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.2
0.68
0.8
77.9
36.6
Minor 5ss
24.2
-3
3.2
29.7
43.3
Minor BPS
47.1
-0.3
1.6
48.16
40.1

Associated Gene:

Gene:
TUBGCP4
Ensembl Gene ID:
ENSAPLG00000010724
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011226
21595511 - 21616832
21322