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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21613980_21618696_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21613980 - 21618696
Intron Length:
4717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
TGACTATTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
GTGTTTTTGACT
Flanking Amino Acid:
NGKIAHLPPKTVLDNERLTA
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
72.5
37.3
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
76.4
0.59
0.9
69.9
40.3
Minor 5ss
36.6
-1.5
3.3
47.2
42.3
Minor BPS
69.2
0.69
1.2
78.8
37.8

Associated Gene:

Gene:
IQGAP1
Ensembl Gene ID:
ENSAPLG00000011175
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011766
21613782 - 21674243
60462