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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2162871_2163237_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2162871 - 2163237
Intron Length:
367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATTAC
U12 Branch Point Sequence:
TTTTTTTTAATA
Flanking Amino Acid:
FAYEGLKKATRVLESHFQSQ
Intron Amino Acid Position:
1149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1.1
72.7
38.3
Major BPS
62.3
0.31
1.2
54
41.2
Major PPT
86.6
0.82
0.7
85.3
27.9
Minor 5ss
30.9
-2.2
2.6
34.6
40.9
Minor BPS
82.2
1.01
0.9
86.33
25.3

Associated Gene:

Gene:
MYO5C
Ensembl Gene ID:
ENSAPLG00000023919
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029054
2152638 - 2187132
34495