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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21629468_21629815_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21629468 - 21629815
Intron Length:
348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTATCTTTATTT
Flanking Amino Acid:
IYDREQTRYKATGLHFRHTD
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
77.7
30.1
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
84.1
0.77
0.8
81.9
33.8
Minor 5ss
27.6
-2.6
3.3
39.2
46.2
Minor BPS
63.5
0.5
1.6
76.15
41.3

Associated Gene:

Gene:
IQGAP1
Ensembl Gene ID:
ENSAPLG00000011175
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044274
21616788 - 21674243
57456
ENSAPLT00000031763
21616360 - 21674243
57884
ENSAPLT00000024498
21616360 - 21674243
57884
ENSAPLT00000011766
21613782 - 21674243
60462