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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21629894_21631133_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21629894 - 21631133
Intron Length:
1240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTATCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGTTTTATCT
Flanking Amino Acid:
NAMAEIGLPKIFYPETTDIY
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
77.3
37.6
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
84.9
0.79
0.8
82.1
34.6
Minor 5ss
36.9
-1.5
2.9
51.8
44.6
Minor BPS
64
0.52
1.7
82.72
39.3

Associated Gene:

Gene:
IQGAP1
Ensembl Gene ID:
ENSAPLG00000011175
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024498
21616360 - 21674243
57884
ENSAPLT00000011766
21613782 - 21674243
60462
ENSAPLT00000044274
21616788 - 21674243
57456
ENSAPLT00000031763
21616360 - 21674243
57884