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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21631211_21633373_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21631211 - 21633373
Intron Length:
2163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTCTGATTGATT
Flanking Amino Acid:
PRCIYCIHALSLYLFKLGLA
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.5
36.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
95.8
1.03
0.5
92.1
18.3
Minor 5ss
38.5
-1.3
3.4
55.9
48.3
Minor BPS
52.2
0.15
2.1
75.85
41.4

Associated Gene:

Gene:
IQGAP1
Ensembl Gene ID:
ENSAPLG00000011175
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044274
21616788 - 21674243
57456
ENSAPLT00000031763
21616360 - 21674243
57884
ENSAPLT00000024498
21616360 - 21674243
57884
ENSAPLT00000011766
21613782 - 21674243
60462