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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2163319_2163430_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2163319 - 2163430
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTG
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAC
U12 Branch Point Sequence:
TTTACCTGCACA
Flanking Amino Acid:
ESYDFEDVRSRLSTEDLEHL
Intron Amino Acid Position:
1122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
80.7
34.7
Major BPS
71.4
0.53
1.1
63.4
44
Major PPT
74.5
0.55
0.9
66
39.6
Minor 5ss
43.9
-0.7
2.8
58.4
46.2
Minor BPS
59.8
0.3
2
77.34
39.2

Associated Gene:

Gene:
MYO5C
Ensembl Gene ID:
ENSAPLG00000023919
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029054
2152638 - 2187132
34495