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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2163495_2164314_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2163495 - 2164314
Intron Length:
820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGCTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATATGATAAACT
Flanking Amino Acid:
QAQSQKREMREKMSEVTKQL
Intron Amino Acid Position:
1101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.3
38.5
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
43.7
-0.7
2.9
50.6
46.1
Minor BPS
48
-0
2.3
72.5
44

Associated Gene:

Gene:
MYO5C
Ensembl Gene ID:
ENSAPLG00000023919
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029054
2152638 - 2187132
34495