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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21641228_21642388_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21641228 - 21642388
Intron Length:
1161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGAGC
5'SS Class:
major
3'SS Sequence:
TTGGAATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CTTTCCTCATTC
Flanking Amino Acid:
ANRAAQQYQQRLAAVAKINS
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.6
39.9
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
68.7
0.42
1
59.2
46
Minor 5ss
34.3
-1.8
3.2
43.3
38.2
Minor BPS
58
0.23
1.8
70.35
41.6

Associated Gene:

Gene:
IQGAP1
Ensembl Gene ID:
ENSAPLG00000011175
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044274
21616788 - 21674243
57456
ENSAPLT00000031763
21616360 - 21674243
57884
ENSAPLT00000024498
21616360 - 21674243
57884
ENSAPLT00000011766
21613782 - 21674243
60462