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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2164409_2164837_R

Intron Information:

Intron Rank:
25
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2164409 - 2164837
Intron Length:
429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTAT
5'SS Class:
strong_major
3'SS Sequence:
ATGTCTGATTAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
CATTCTGTAATT
Flanking Amino Acid:
EVGQLTKQTQKIPELQKEIE
Intron Amino Acid Position:
1070

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78
32.3
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
58.2
0.18
1.2
61.3
43.5
Minor 5ss
37.8
-1.4
3.5
55
49.2
Minor BPS
58.8
0.35
2
76.34
41.1

Associated Gene:

Gene:
MYO5C
Ensembl Gene ID:
ENSAPLG00000023919
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029054
2152638 - 2187132
34495