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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21647365_21650834_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21647365 - 21650834
Intron Length:
3470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
ACATTCTCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CTTTCCTCATCA
Flanking Amino Acid:
LLRAKREKAQDTQDETAVLW
Intron Amino Acid Position:
592

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
77.5
0.62
0.9
74.1
35.8
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
62.6
0.39
1.9
75.6
41.9

Associated Gene:

Gene:
IQGAP1
Ensembl Gene ID:
ENSAPLG00000011175
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011766
21613782 - 21674243
60462
ENSAPLT00000044274
21616788 - 21674243
57456
ENSAPLT00000031763
21616360 - 21674243
57884
ENSAPLT00000024498
21616360 - 21674243
57884