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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2165019_2166204_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2165019 - 2166204
Intron Length:
1186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATGGAAT
5'SS Class:
major
3'SS Sequence:
TTGTCTTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CATCTTTTCATT
Flanking Amino Acid:
DDIQKEESQRMILEKKIQNQ
Intron Amino Acid Position:
1009

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
73.3
36.9
Major BPS
100
1.24
0.5
100
0
Major PPT
77.5
0.62
0.9
77.4
36.9
Minor 5ss
42.4
-0.8
3.2
61.2
43.8
Minor BPS
49
0
1.7
65.33
40.1

Associated Gene:

Gene:
MYO5C
Ensembl Gene ID:
ENSAPLG00000023919
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029054
2152638 - 2187132
34495