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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21652108_21652450_F

Intron Information:

Intron Rank:
18
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
21652108 - 21652450
Intron Length:
343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGTAG
5'SS Class:
major
3'SS Sequence:
AACACTAAACCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CACTAAA
U12 Branch Point Sequence:
CCTACCATAACA
Flanking Amino Acid:
DTQLSREEIQSTISGVTAAY
Intron Amino Acid Position:
726

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
66.6
41.6
Major BPS
65.2
0.38
0.9
65.5
27.9
Major PPT
51
0.02
1.1
41.9
41.2
Minor 5ss
34.7
-1.7
3.5
45.4
49.7
Minor BPS
60.6
0.33
1.7
69.02
43.1

Associated Gene:

Gene:
IQGAP1
Ensembl Gene ID:
ENSAPLG00000011175
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044274
21616788 - 21674243
57456
ENSAPLT00000031763
21616360 - 21674243
57884
ENSAPLT00000024498
21616360 - 21674243
57884
ENSAPLT00000011766
21613782 - 21674243
60462