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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21653822_21653927_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21653822 - 21653927
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCGAAG
5'SS Class:
major
3'SS Sequence:
TACTTTTCTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAC
U12 Branch Point Sequence:
TTTTGGTTACTT
Flanking Amino Acid:
LRAHKDQVVKIQSMTRMYQA
Intron Amino Acid Position:
811

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.3
60.5
45.8
Major BPS
72.6
0.56
0.9
63.1
35.8
Major PPT
81.3
0.7
0.7
76.8
31.7
Minor 5ss
35.8
-1.6
3.4
47.3
48.3
Minor BPS
48.4
-0
2.6
79.08
43.9

Associated Gene:

Gene:
IQGAP1
Ensembl Gene ID:
ENSAPLG00000011175
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031763
21616360 - 21674243
57884
ENSAPLT00000024498
21616360 - 21674243
57884
ENSAPLT00000011766
21613782 - 21674243
60462
ENSAPLT00000044274
21616788 - 21674243
57456