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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21658033_21658170_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21658033 - 21658170
Intron Length:
138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTGGGTTAACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
CTTGGGTTAACC
Flanking Amino Acid:
TGNPTVIKMVMESQTGEASK
Intron Amino Acid Position:
1057

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
84
27.9
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
62.9
0.29
1.1
55.7
47.9
Minor 5ss
44.9
-0.5
2.8
58.5
40.5
Minor BPS
47.6
-0.2
2.5
65.55
46.5

Associated Gene:

Gene:
IQGAP1
Ensembl Gene ID:
ENSAPLG00000011175
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044274
21616788 - 21674243
57456