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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2166269_2166864_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2166269 - 2166864
Intron Length:
596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAATAA
5'SS Class:
major
3'SS Sequence:
TATTTTTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TATTTTTTGACA
Flanking Amino Acid:
KLQEKTEEMKEKMDALTKQL
Intron Amino Acid Position:
988

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
67.4
34
Major BPS
74.8
0.62
1
67
39.8
Major PPT
82.7
0.74
1
80.1
37.1
Minor 5ss
35.5
-1.6
3.3
47
48.4
Minor BPS
74
0.75
1.1
78.4
31.4

Associated Gene:

Gene:
MYO5C
Ensembl Gene ID:
ENSAPLG00000023919
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029054
2152638 - 2187132
34495