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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21669153_21670503_F

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21669153 - 21670503
Intron Length:
1351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
CATTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTCTCTTTATTT
Flanking Amino Acid:
TCLDNLASKGKVSKKPREMK
Intron Amino Acid Position:
1542

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
88.1
25.2
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
88.1
0.86
0.7
80.5
36.7
Minor 5ss
42
-0.9
2.8
55.1
35.9
Minor BPS
69.4
0.69
1.5
83.14
39

Associated Gene:

Gene:
IQGAP1
Ensembl Gene ID:
ENSAPLG00000011175
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011766
21613782 - 21674243
60462
ENSAPLT00000044274
21616788 - 21674243
57456
ENSAPLT00000031763
21616360 - 21674243
57884
ENSAPLT00000024498
21616360 - 21674243
57884