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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2168617_2169829_R

Intron Information:

Intron Rank:
19
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
2168617 - 2169829
Intron Length:
1213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATTTTTG
5'SS Class:
weak_major
3'SS Sequence:
TTGTCTTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TGTCTTTTGAAG
Flanking Amino Acid:
QQYFRGQRTVRQAITARALK
Intron Amino Acid Position:
797

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
64.6
41.9
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
77.3
0.61
1
79.1
33.2
Minor 5ss
51.7
0.06
2.4
67.2
43.9
Minor BPS
50.7
-0.1
1.5
57.25
38.2

Associated Gene:

Gene:
MYO5C
Ensembl Gene ID:
ENSAPLG00000023919
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029054
2152638 - 2187132
34495