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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2175884_2176514_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2175884 - 2176514
Intron Length:
631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCTGT
5'SS Class:
major
3'SS Sequence:
TCCCTTTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AATGATTTAATC
Flanking Amino Acid:
SFIIQHFADKVEYKCEGFLE
Intron Amino Acid Position:
555

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69.7
43.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
74.8
0.56
0.9
70.7
33.5
Minor 5ss
44.2
-0.6
3.2
64.5
46.9
Minor BPS
55.5
0.15
1.6
62.64
37

Associated Gene:

Gene:
MYO5C
Ensembl Gene ID:
ENSAPLG00000023919
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029054
2152638 - 2187132
34495